New Paper (2025): Modelling the prebiotic origins of regulation and agency in evolving protocell ecologies

How could the first living systems learn to regulate themselves before the emergence of genes? In their new paper, Ben Shirt-Ediss, Arián Ferrero-Fernández, Daniele De Martino, Leonardo Bich, Álvaro Moreno, and Kepa Ruiz-Mirazo tackle this question through Araudia, a novel simulation platform for studying protocell evolution. They show that simple protocell ecologies, composed of metabolically diverse micro-reactors, can spontaneously develop second-order regulatory mechanisms—rudimentary forms of prebiotic agency. By extending consumer–resource models with stochastic evolutionary dynamics and “short-term memory,” the study reveals how adaptive, lac-operon-like behaviors could emerge even before genetics, marking a key step toward understanding the transition from chemistry to life.

Read here.